Electron Microscopy - Microlist

Techniques

Electron Microscopy

Video Tutorials on Ultrathin sectioning

Ulra-thin sectioning with a diamond knife

Video tutorial - dual-axis tomogram generation in Etomo (IMOD)

Video tutorial on dual-axis tomogram generation in eTomo

Video Tutorials on Electron Microscopy

Video tutorials on electron microscopy imaging sample preparation and analysis.

Tutorial - Volume Electron Microscopy Segmentation in IMOD 3dmod

Tutorial on manual segmentation in 3dmod (IMOD).

Dragonfly (Non-Commercial Licensing)

Non-commercial license for Dragonfly software
Licensed by Object Research Systems

Microscopy Image Browser

MATLAB-based software package for advanced image processing
Created by Ilya Belevich, Merja Joensuu, Darshan Kumar, Helena Vihinen and Eija Jokitalo

Weka

Data mining with open source machine learning software
Created by University of Waikato

SuRVoS Workbench

Super Region Volume Segmentation
Created by Diamond Light Source & The University of Nottingham.

Three dimensional electron microscopy

Overview of existing variants of 3D EM

ZEISS Webinar: Enabling Connectomics with Multi-beam Scanning Electron Microscopy

Challenges in Connectomics & recent technological developments

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

Software Demo IMOD

Videos from the NBCR Summer Training Program

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

The 20th International Microscopy Congress (IMC20)

Format: In-person
Starts on 2023-09-10
Location: Busan, Republic of Korea, 35.17955, 129.07564

Microscopy Microscience Congress 2023

Format: In-person
Starts on 2023-07-04
Location: Oxford, UK, 51.75202, -1.25773

Microscopy & Microanalysis 2023

Format: In-person
Starts on 2023-07-23
Location: Minneapolis, MN, USA, 44.97775, -93.26501

Deep learning for image analysis

Format: In-person
Location Heidelberg, Germany, 49.39875, 8.67243
Starts on 2023-06-05

Microscopy data analysis: machine learning and the BioImage Archive

Format: Remote / Virtual
Starts on 2023-03-22

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL