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Techniques
Electron Microscopy
Video Tutorials on Ultrathin sectioning
Ulra-thin sectioning with a diamond knife
Video tutorial - dual-axis tomogram generation in Etomo (IMOD)
Video tutorial on dual-axis tomogram generation in eTomo
Video Tutorials on Electron Microscopy
Video tutorials on electron microscopy imaging sample preparation and analysis.
Tutorial - Volume Electron Microscopy Segmentation in IMOD 3dmod
Tutorial on manual segmentation in 3dmod (IMOD).
Dragonfly (Non-Commercial Licensing)
Non-commercial license for Dragonfly software
Licensed by Object Research Systems
Microscopy Image Browser
MATLAB-based software package for advanced image processing
Created by Ilya Belevich, Merja Joensuu, Darshan Kumar, Helena Vihinen and Eija Jokitalo
Weka
Data mining with open source machine learning software
Created by University of Waikato
SuRVoS Workbench
Super Region Volume Segmentation
Created by Diamond Light Source & The University of Nottingham.
Three dimensional electron microscopy
Overview of existing variants of 3D EM
ZEISS Webinar: Enabling Connectomics with Multi-beam Scanning Electron Microscopy
Challenges in Connectomics & recent technological developments
Virtual Pub: Building a Volume EM community
An introduction to the Eurobioimaging 'virtual pub' series
Correlative super resolution and electron microscopy methods for nanomedicine
Correlative microscopy talk by Silvia Pujals
“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan
Volume EM Series with Kedar Narayan
Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"
3D-CLEM lecture by Harald Hess
Software Demo IMOD
Videos from the NBCR Summer Training Program
Electron microscopy manuals, lectures and tutorials
A variety of video resources for EM
Microscopy Image Browser
Video playlist on how to use Microscopy Image Browser
Virtual Tour: Electron Microscopy Imaging
Allen Institute for Brain Science's Electron Microscopy program
ilastik
Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
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