Resources for Light Sheet Microscopy - Microlist

Techniques

Light Sheet Microscopy

Microforum

The light microscopy discussion forum

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Format: In-person
Location: Woods Hole, MA
Starts on 2023-05-08

UC2 CourseBOX

Open-source toolbox for Light Microscopy Courses

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL

SPIMagine

GPU accelerated volume rendering
Created by Weigert M

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab

diSPIM Wiki

A wiki for diSPIM users

UltraMicroscope II – A User Guide

LaVision BioTec UltraMicroscope II Guide

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg

OpenSPIM

A platform to build, adapt and enhance SPIM technology