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Techniques

Light Sheet Microscopy

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Cold Spring Harbor Laboratory (CSHL)

mesoSPIM user meeting & "Build a mesoSPIM" workshop

Begins 2020-03-09
Must register by 2020-01-24

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL
Open source

SPIMagine

GPU accelerated volume rendering
Created by Weigert M
Open source

The mesoSPIM Initiative

Open-source light-sheet microscopes for imaging cleared tissue
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

UC2 Open-Source Hardware Project

Respository for Open-Science modular microscope system
Created by Nanoimaging at the IPHT Leibniz Institut Jena
Open source

Big Data, Big Problems Light-Sheet Workshop

5 days
in Princeton, NJ
Applications due on 2020-04-15
Course starts on 2020-07-27

Princeton University

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab
Open source

Microforum

A forum for light microscopy discussion

Optical Microscopy & Imaging in the Biomedical Sciences

10 days
in Woods Hole, MA
Applications due on 2020-05-13
Course starts on 2020-08-17

Marine Biological Laboratory

diSPIM Wiki

A wiki for diSPIM users

UltraMicroscope II – A User Guide

LaVision BioTec UltraMicroscope II Guide

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

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