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Techniques

Light Sheet Microscopy

Microforum

A forum for light microscopy discussion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Cold Spring Harbor Laboratory (CSHL)

UC2 CourseBOX

Open-source toolbox for Light Microscopy Courses

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC
Open source

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL
Open source

SPIMagine

GPU accelerated volume rendering
Created by Weigert M
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab
Open source

diSPIM Wiki

A wiki for diSPIM users

UltraMicroscope II – A User Guide

LaVision BioTec UltraMicroscope II Guide

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

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