Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Ph.D. Position in Advanced Light Microscopy for Life Sciences

For Istituto Italiano di Tecnologia
In Genoa, Italy

Head of Light Microscopy Facility (f/m/d)

For Heinrich Pette Institute
In Hamburg, Germany

Microscopy Research Technician

For The Wyss Center
In Genève, Switzerland

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microcourses YouTube Channel

Short microscopy tutorials

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL
Open source

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

Pixel Chart

Created by Andrei Kashcha
Open source

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

6 listings

Image Analysis

48 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

7 listings

Machine Learning

14 listings

Confocal Microscopy

7 listings

Detectors

6 listings

Fluorescence Microscopy

11 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020 (REMOTE)

Begins 2020-08-02
in Milwaukee, WI, USA

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Frontiers in BioImaging 2020

Begins 2020-06-24
in London, UK

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

22 listings

6 listings

16 listings

2 listings

3 listings

No listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Ph.D. Position in Advanced Light Microscopy for Life Sciences

Head of Light Microscopy Facility (f/m/d)

Microscopy Research Technician

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

CIDRE

Multi-view simulation

Open source laser engine

TIFFFolder

ilastik

LEGOLish

Nemonic Consortium Resources & Blog

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

FIJI

The Microscope Objective Patent Explorer

Pixel Chart

easyFRAP

Napari

CellCognition

Icy

FPbase

Chroma Spectraviewer

SIMcheck

pyCUDAdecon

OpenSPIM

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020 (REMOTE)

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Frontiers in BioImaging 2020

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists