Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Some of our favs

Featured Listings

Facility Managers Training Course

2 days
in York, UK

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31

Microcourses YouTube Channel

Online Course

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Seeing is Believing - Imaging the Molecular Processes of Life

Begins 2019-10-09
in Heidelberg, Germany

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Browse

Getting things done

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Image and Data Analysis Core Software List

A list of open-source software for image analysis

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Browse by Technique

What are you in to?

Fluorescent Proteins

7 listings

Super-Resolution Microscopy

7 listings

Image Analysis

33 listings

Light Sheet Microscopy

8 listings

Quantitative Microscopy

6 listings

Machine Learning

7 listings

Confocal Microscopy

8 listings

Detectors

6 listings

Fluorescence Microscopy

9 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Seeing is Believing - Imaging the Molecular Processes of Life

Begins 2019-10-09
in Heidelberg, Germany

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark

Society of Biomolecular Imaging and Informatics

Begins 2019-09-17
in Boston, MA, USA

Microscopy Courses

Nothing beats full immersion

Facility Managers Training Course

2 days
in York, UK

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31

Microcourses YouTube Channel

Online Course

Bangalore Microscopy Course

8 days
in Bengaluru India

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

Advanced Fluorescence Imaging Techniques

6 days
in Heidelberg, Germany

Resources by Location

Where do you want to be?

Europe

30 listings

16 listings

47 listings

3 listings

1 listing

1 listing

µlist

A searchable database of resourcesfor light microscopists

Featured Listings

Facility Managers Training Course

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

FPbase

Seeing is Believing - Imaging the Molecular Processes of Life

iScopeCalc

FIJI

SIMcheck

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

SIMcheck

FIJI

iScopeCalc

FPbase

The Open Microscopy Environment

The Microscope Objective Patent Explorer

PYthon Microscopy Environment

Thermo Fisher Scientific Fluorescence Spectraviewer

OpenSPIM

CellProfiler

TIFFFolder

Camera Simulator

Icy

Image and Data Analysis Core Software List

PatternUnmixer 2.0

Image Analysis Focused Interest Group

ScanImage

BioImageXD

Danuser Lab Software

BisQue

What are you in to?

Find a meeting

Seeing is Believing - Imaging the Molecular Processes of Life

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Society of Biomolecular Imaging and Informatics

Nothing beats full immersion

Facility Managers Training Course

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Bangalore Microscopy Course

Master's Degree Programme in Biomedical Imaging

Advanced Fluorescence Imaging Techniques

Where do you want to be?

A searchable database of resources
for light microscopists