Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

NEUBIAS Academy

in Europe
Online Course
Course starts on 2020-04-14

Bioimage Analysis Course 2020 - Online

1 days
in Helsinki, The Netherlands
Online Course
Applications due on 2020-04-06
Course starts on 2020-05-11

Optical Imaging Across Biological Length Scales

13 days
in Asburn, VA
Course starts on 2020-11-08

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

SPIMagine

GPU accelerated volume rendering
Created by Weigert M
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

BioImage Archive

A hub for biological images
Created by EMBI-EBI

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School
Open source

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab

Mastodon

Tracking and track-editing framework
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

Browse by Technique

What are you in to?

Fluorescent Proteins

10 listings

Super-Resolution Microscopy

7 listings

Image Analysis

49 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

8 listings

Machine Learning

15 listings

Confocal Microscopy

8 listings

Detectors

7 listings

Fluorescence Microscopy

13 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

23 listings

7 listings

17 listings

2 listings

2 listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

NEUBIAS Academy

Bioim­age Analysis Course 2020 - Online

Optical Imaging Across Biological Length Scales

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

The Microscopy and Microanalysis Facility Resource List

Chroma Spectraviewer

SPIMagine

BisQue

pyCUDAdecon

CSBDeep

fairSIM

QuPath

Optogenetics Resource Center

BioImage Archive

LLSpy-SLM

LLSpy

iScopeCalc

Nucleaizer.org

Mastodon

Nemonic Consortium Resources & Blog

Camera Simulator

Multi-view simulation

Fluorescent Biosensor Database

Optical Microscopy Course Educational Kit

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists

Bioimage Analysis Course 2020 - Online