Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

{{ listingType.name }}

prev

next

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

{{label}}

for more search options, visit Explore

Our latest submissions

New on Microlist!

Scientific Software Engineer - Image Analysis for Microscopy

For UKRI STFC - CLF Octopus facility
In Harwell Oxford

Super Resolution Microscopist

For UKRI -STFC CLF Octopus Facility
In Harwell Oxford

Light Microscopy Specialist

For Virginia Tech
In Blacksburg

New to Microlist!

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Browse

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Tools for microscopists

Getting things done

BioImage Archive

A hub for biological images
Created by EMBI-EBI

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies

Mastodon

Tracking and track-editing framework

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden

Quantitative Phase Microscopy Software interface

GPU DHM
Created by Lee Lab @JCSMR

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt

Pixel Chart

Learn how an image histogram is formed
Created by Andrei Kashcha

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

BigStitcher

Stitching for large datasets
Created by Preibisch Lab

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla

Image and Data Analysis Core Software List

A list of open-source software for image analysis

Microscopy Training Resources List

A list of microscopy training resources
Created by BioImaging North America

Browse by Technique

What are you in to?

Electron Microscopy

19 listings

Fluorescence Microscopy

16 listings

Confocal Microscopy

10 listings

Super-Resolution Microscopy

7 listings

66 listings

Fluorescent Proteins

9 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

6 listings

Machine Learning

20 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location Turku, Finland, 60.45181, 22.26663

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location Boston, MA, USA, 42.36008, -71.05888

Resources by Location

Where do you want to be?

5 listings

No listings

20 listings

No listings

1 listing

No listings