Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Ecole de Houches 2020 : Fluorescence markers for advanced microscopy : From photophysics to biology

in Les Houches, France
Applications due on 2019-09-30
Course starts on 2020-03-29

Microscopy Imaging Associate

For Columbia University: Mortimer B. Zuckerman Mind Brain Behavior Institute
In New York, NY, USA

Biological and pharmaceutical applications of CRS microscopy conference

Begins 2019-12-02
in Odense, Denmark

Some of our favs

Featured Listings

Facility Managers Training Course

2 days
in York, UK
Course starts on 2019-10-14

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Seeing is Believing - Imaging the Molecular Processes of Life

Begins 2019-10-09
in Heidelberg, Germany

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Browse

Getting things done

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Image and Data Analysis Core Software List

A list of open-source software for image analysis

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

Pixel Chart

Created by Andrei Kashcha
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

12 listings

Super-Resolution Microscopy

12 listings

Image Analysis

39 listings

Light Sheet Microscopy

13 listings

Quantitative Microscopy

9 listings

Machine Learning

11 listings

Confocal Microscopy

13 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Seeing is Believing - Imaging the Molecular Processes of Life

Begins 2019-10-09
in Heidelberg, Germany

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark

Society of Biomolecular Imaging and Informatics

Begins 2019-09-17
in Boston, MA, USA

Microscopy Courses

Nothing beats full immersion

Facility Managers Training Course

2 days
in York, UK
Course starts on 2019-10-14

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Bangalore Microscopy Course

8 days
in Bengaluru India
Future dates TBA

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Applications due on 2020-01-04
Course starts on 2020-03-09

Resources by Location

Where do you want to be?

Europe

47 listings

21 listings

75 listings

3 listings

No listings

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µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Ecole de Houches 2020 : Fluorescence markers for advanced microscopy : From photophysics to biology

Microscopy Imaging Associate

Biological and pharmaceutical applications of CRS microscopy conference

Featured Listings

Facility Managers Training Course

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

FPbase

Seeing is Believing - Imaging the Molecular Processes of Life

iScopeCalc

FIJI

SIMcheck

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

iScopeCalc

FIJI

SIMcheck

FPbase

PYthon Microscopy Environment

LLSpy

Multi-view simulation

Bio-Formats

BigStitcher

BisQue

Image and Data Analysis Core Software List

μManager

OpenSPIM

Thermo Fisher Scientific Fluorescence Spectraviewer

Image Analysis Focused Interest Group

Camera Simulator

OMERO

Pixel Chart

Image Data Resource

fairSIM

What are you in to?

Find a meeting

Seeing is Believing - Imaging the Molecular Processes of Life

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Society of Biomolecular Imaging and Informatics

Nothing beats full immersion

Facility Managers Training Course

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Bangalore Microscopy Course

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

Where do you want to be?

A searchable database of resources
for light microscopists