Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

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Our latest submissions

New on Microlist!

ABiS-GBI 2023 course - Image data: image analysis, data management and reuse

Format: In-person
Location Okazaki, Aichi, Japan, 34.95485, 137.17308
Starts on 2023-07-03

Montreal Light Microscopy Course (MLMC) Fundamentals - Train the Trainer

Format: In-person
Location Montreal, QC, Canada, 45.50189, -73.56739
Starts on 2023-07-24

Course on “Time-resolved Microscopy and Correlation Spectroscopy”

Format: Remote / Virtual
Starts on 2023-07-04

New to Microlist!

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Browse

Getting things done

Dragonfly (Non-Commercial Licensing)

Non-commercial license for Dragonfly software
Licensed by Object Research Systems

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

Royal Microscopy Society Resources and Downloads

Compiled by the Royal Microscopy Society
Created by Royal Microscopy Society

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer

Bioimage Model Zoo

Advanced AI models in one-click

SPIMagine

GPU accelerated volume rendering
Created by Weigert M

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

Resource List from Microscopy Services Laboratory (MSL)

A list of teaching and learning microscopy resources
Created by MSL UNC-Chapel Hill

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt

Open Source 3D Printed Microscope

PUMA 3D Printed Microscope
Created by Dr Paul J. Tadrous
Licensed by GPL v3.0

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet

Browse by Technique

What are you in to?

Electron Microscopy

23 listings

Fluorescence Microscopy

15 listings

Confocal Microscopy

11 listings

Super-Resolution Microscopy

8 listings

Image Analysis

65 listings

Fluorescent Proteins

9 listings

Light Sheet Microscopy

16 listings

Quantitative Microscopy

6 listings

Machine Learning

20 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location Turku, Finland, 60.45181, 22.26663

Super-Resolution Microscopy Summer School

Format: In-person
Location Edinburgh, UK, 55.95325, -3.18827
Starts on 2023-06-17

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location Boston, MA, USA, 42.36008, -71.05888

Deep learning for image analysis

Format: In-person
Location Heidelberg, Germany, 49.39875, 8.67243
Starts on 2023-06-05

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Format: In-person
Location woods hole, MA, USA, 41.55322, -70.60859
Starts on 2023-05-08

Fluorescence imaging beyond intensity

Format: In-person
Location Heidelberg, Germany, 49.39875, 8.67243
Starts on 2023-07-10

Resources by Location

Where do you want to be?

Europe