Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Operations Manager

For EMBL Imaging Centre
In Heidelberg, Germany

Application Specialist in Advanced Light Microscopy Technologies

For EMBL Imaging Centre
In Heidelberg, Germany

Engineer in Advanced Optical/Light Microscopy

For EMBL Imaging Centre
In Heidelberg, Germany

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Addgene Blogposts on Fluorescent Proteins

Lots of posts from leaders in the FP field

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Browse

Getting things done

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

Image and Data Analysis Core Software List

A list of open-source software for image analysis

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

11 listings

Super-Resolution Microscopy

10 listings

Image Analysis

43 listings

Light Sheet Microscopy

12 listings

Quantitative Microscopy

9 listings

Machine Learning

11 listings

Confocal Microscopy

11 listings

Detectors

7 listings

Fluorescence Microscopy

16 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

Biological and pharmaceutical applications of CRS microscopy

Begins 2019-12-02
in Odense, Denmark

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Applications due on 2020-01-04
Course starts on 2020-03-09

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Resources by Location

Where do you want to be?

Europe

40 listings

15 listings

43 listings

2 listings

1 listing

4 listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Operations Manager

Application Specialist in Advanced Light Microscopy Technologies

Engineer in Advanced Optical/Light Microscopy

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

FPbase

iScopeCalc

FIJI

SIMcheck

Addgene Blogposts on Fluorescent Proteins

Icy

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

FPbase

iScopeCalc

SIMcheck

FIJI

Image Data Resource

FrapCalc

μManager

PYthon Microscopy Environment

fairSIM

The Microscopy and Microanalysis Facility Resource List

CellProfiler

Optogenetics Resource Center

PSFj

OpenSPIM

Multi-view simulation

QuPath

Pixel Chart

Image and Data Analysis Core Software List

easyFRAP

BioImageXD

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

Biological and pharmaceutical applications of CRS microscopy

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

iBiology Microscopy Series

Image Analysis with Fiji

Where do you want to be?

A searchable database of resources
for light microscopists