Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

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Our latest submissions

New on Microlist!

Microscopy Research Specialist

For Harvard Medical School
In Boston

Microscopy career scientist position in spatial profiling and tissue imaging

For Harvard Medical School

postdoc

For Hasselt University, Belgium, EU

Some of our favs

Featured Listings

Microcourses YouTube Channel

Short videos on microscopy fundamentals

Microforum

The light microscopy discussion forum

Image Analysis Forum: image.sc

The image analysis discussion forum

Browse

Getting things done

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies

SpekCheck

For filterset optimisation
Created by Micron Oxford

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

OpenSPIM

A platform to build, adapt and enhance SPIM technology

CIDRE

A flatfield illumination correction method
Created by Horvath Lab

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS

Browse by Technique

What are you in to?

Fluorescent Proteins

8 listings

Super-Resolution Microscopy

7 listings

Image Analysis

57 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

5 listings

Machine Learning

17 listings

Confocal Microscopy

9 listings

Detectors

7 listings

Fluorescence Microscopy

14 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

Core Facility Leadership and Management Course

Format: In-person
Location: Düsseldorf Germany
Starts on 2022-06-27

Leadership and Management in Core Facilities

Format: In-person
Location: Chicago, IL
Starts on 2022-06-13

Stereology Workshop

Format: In-person
Location: Bern, Switzerland
Starts on 2022-08-08

Resources by Location

Where do you want to be?

Europe

24 listings

6 listings

USA

19 listings

Asia

1 listing

Canada