Microlist – A resource for light microscopists

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A resource for light microscopists

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Tools for microscopists

Getting things done

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

BioImageXD

Analyzing, processing & visualizing nD images
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

12 listings

27 listings

Light Sheet Microscopy

9 listings

Quantitative Microscopy

7 listings

Machine Learning

6 listings

Confocal Microscopy

9 listings

7 listings

Fluorescence Microscopy

12 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Swiss Lightsheet Microscopy Workshop

Begins 2019-04-24
in Universität Zurich, Winterthurerstrasse 190, 8057 Zürich, Switzerland

Junior Scientist Workshop on Biological Optical Microscopy

Begins 2019-09-08
in Ashburn, VA, USA

6th International Congress on Microscopy and Spectroscopy (INTERM)

Begins 2019-05-12
in Ölüdeniz, Fethiye/Muğla Province, Turkey

Single Molecule Localization Microscopy Symposium 2019

Begins 2019-08-26
in Delft, Netherlands

Microscopy Courses

Nothing beats full immersion

Imaging Structure & Function in the Nervous System

20 days
in Cold Spring Harbor, NY, USA
Applications due on 2019-04-01

Super-resolution Microscopy: SR SIM and PALM/STORM

1 days
in Stellenbosch, South Africa
Applications due on 2019-05-06

iBiology Microscopy Series

Online

Light Microscopy Summer School

3 days
in York, England

Microinjection into Adherent Cells

2 days
in Heidelberg, Germany

Super-Resolution Microscopy

6 days
in Heidelberg, Germany

Resources by Location

Where do you want to be?

20 listings

16 listings

47 listings

1 listing

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