Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Ph.D. Position in Advanced Light Microscopy for Life Sciences

For Istituto Italiano di Tecnologia
In Genoa

Software Engineer in Bioimaging

For The Wyss Center
In Genève

Imaging One World Weekly Lecture Series (REMOTE)

Begins 2020-05-11

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microcourses YouTube Channel

Short microscopy tutorials

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment
Open source

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford
Open source

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF
Open source

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro
Open source

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL
Open source

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

6 listings

Image Analysis

48 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

7 listings

Machine Learning

14 listings

Confocal Microscopy

7 listings

Detectors

6 listings

Fluorescence Microscopy

11 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020 (REMOTE)

Begins 2020-08-02
in Milwaukee

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena

Frontiers in BioImaging 2020

Begins 2020-06-24
in London

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

20 listings

6 listings

15 listings

2 listings

2 listings

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µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Ph.D. Position in Advanced Light Microscopy for Life Sciences

Software Engineer in Bioimaging

Imaging One World Weekly Lecture Series (REMOTE)

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

miCube Open Source Microscope

SIMcheck

CellCognition

Image Data Resource

CIDRE

FPbase

QuPath

Thermo Fisher Scientific Fluorescence Spectraviewer

Advanced Cell Classifier

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

iScopeCalc

CSBDeep

Optogenetics Resource Center

pyCUDAdecon

OMERO

μManager

Icy

The Microscope Objective Patent Explorer

Open source laser engine

PSFj

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020 (REMOTE)

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Frontiers in BioImaging 2020

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists