Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Bioimage Data Analysis Workflows

Open Access textbook on image analysis

Postdoctoral Fellow in High-throughput Imaging

For Wellcome Sanger Institute
In Cambridge, Hinxton

Cellular Imaging Core Facility Manager

For University of Oxford
In Oxford, England, UK

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Addgene Blogposts on Fluorescent Proteins

Lots of posts from leaders in the FP field

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Browse

Getting things done

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

BioImage Archive

A hub for biological images
Created by EMBI-EBI

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

NIH Figshare.com

A data repository for all NIH-funded researchers
Created by National Institutes of Health

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

Image and Data Analysis Core Software List

A list of open-source software for image analysis

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

11 listings

Super-Resolution Microscopy

10 listings

Image Analysis

45 listings

Light Sheet Microscopy

12 listings

Quantitative Microscopy

9 listings

Machine Learning

12 listings

Confocal Microscopy

11 listings

Detectors

7 listings

Fluorescence Microscopy

17 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

Biological and pharmaceutical applications of CRS microscopy

Begins 2019-12-02
in Odense, Denmark

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Applications due on 2020-01-04
Course starts on 2020-03-09

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Resources by Location

Where do you want to be?

Europe

37 listings

17 listings

43 listings

3 listings

No listings

2 listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Bioimage Data Analysis Workflows

Postdoctoral Fellow in High-throughput Imaging

Cellular Imaging Core Facility Manager

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

FPbase

iScopeCalc

FIJI

SIMcheck

Addgene Blogposts on Fluorescent Proteins

Icy

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

iScopeCalc

FIJI

SIMcheck

FPbase

The Microscopy and Microanalysis Facility Resource List

fairSIM

SpekCheck

QuPath

BioImage Archive

CellCognition

Chroma Spectraviewer

EAMNET Downloads

NIH Figshare.com

Optogenetics Resource Center

Image and Data Analysis Core Software List

PSFj

easyFRAP

CellOrganizer

Optical Microscopy Course Educational Kit

BigStitcher

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

Biological and pharmaceutical applications of CRS microscopy

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

iBiology Microscopy Series

Image Analysis with Fiji

Where do you want to be?

A searchable database of resources
for light microscopists