Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Director of the Biomedical Computer Vision Facility

For Harvard Medical School
In Boston

Optical Imaging Analyst

For Van Andel Institute
In 333 Bostwick Ave NE

Head of sales at Interherence, Erlangen, DE

For Interherence GmbH
In Henkestraße 91

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet
Open source

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden
Open source

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

Image and Data Analysis Core Software List

A list of open-source software for image analysis
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc
Open source

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber
Open source

Microscopy Training Resources List

A list of microscopy training resources
Created by BioImaging North America
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

8 listings

Image Analysis

58 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

6 listings

Machine Learning

17 listings

Confocal Microscopy

9 listings

Detectors

8 listings

Fluorescence Microscopy

14 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscience Microscopy Congress 2021

Begins 2021-07-05
This event will take place online
Must register by 2021-05-21
Abstract deadline is 2021-03-18

Core Technologies for Life Sciences 2021

Begins 2021-09-14
This event will take place in-person
in Lisboa

Trends in Microscopy

Begins 2022-03-21
This event will take place in-person
in Münsingen

European Light Microscopy Initiative (ELMI) 2021

Begins 2021-06-22
This event will take place online
Must register by 2021-04-28

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

17 listings

2 listings

21 listings

2 listings

1 listing

2 listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Director of the Biomedical Computer Vision Facility

Optical Imaging Analyst

Head of sales at Interherence, Erlangen, DE

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

SIMcheck

Python Bioimage Computing Toolkit

LifeHack

CIDRE

CellCognition

EAMNET Downloads

fairSIM

European Advanced Light Microscopy Network (EAMNET)

Napari

Image and Data Analysis Core Software List

Pixel Chart

Thermo Fisher Scientific Fluorescence Spectraviewer

Micro-Manager2 MacroExtensions

CSBDeep

VisBio

Microscopy Training Resources List

Optogenetics Resource Center

The Microscopy and Microanalysis Facility Resource List

Image Tools Resource

pyCUDAdecon

What are you in to?

Find a meeting

Microscience Microscopy Congress 2021

Core Technologies for Life Sciences 2021

Trends in Microscopy

European Light Microscopy Initiative (ELMI) 2021

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists