Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Research Technologist- Histology

For Gladstone Institutes
In San Francisco

Research Technologist - Light Microscopy Core

For Gladstone Institutes
In San Francisco

Smart Microscopy - Image analysis to improve remote image acquisition

4 days
Online Course
Applications due on 2021-04-26
Course starts on 2021-05-17

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC
Open source

smfBox

Build a single molecule FRET box
Created by Craggs Lab
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Managing Core Facilities

Compiled by the Microscopy Alliance
Created by Microscopy Alliance
Open source

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics
Open source

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD
Open source

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
Open source

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

8 listings

Image Analysis

56 listings

Light Sheet Microscopy

18 listings

Quantitative Microscopy

6 listings

Machine Learning

15 listings

Confocal Microscopy

10 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscience Microscopy Congress 2021

Begins 2021-07-05
This event will take place online
Must register by 2021-05-21
Abstract deadline is 2021-03-18

Core Technologies for Life Sciences 2021

Begins 2021-09-14
This event will take place in-person
in Lisboa

European Light Microscopy Initiative (ELMI) 2021

Begins 2021-06-22
This event will take place online
Abstract deadline is 2021-04-13

Light-Sheet Fluorescence Microscopy Virtual Conference

Begins 2021-05-09
This event will take place online

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

9 listings

2 listings

15 listings

1 listing

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µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Research Technologist- Histology

Research Technologist - Light Microscopy Core

Smart Microscopy - Image analysis to improve remote image acquisition

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

smfBox

BigStitcher

FPbase

Managing Core Facilities

The Open Microscopy Environment

Optical Microscopy Course Educational Kit

OpenSPIM

Camera Simulator

Multi-view reconstruction

Fluorescent Biosensor Database

PYthon Microscopy Environment

Mesmerize: A highly versatile platform for calcium imaging analysis

Bioimage Informatics Index

SIMcheck

Advanced Cell Classifier

BioImageXD

easyFRAP

PSFj

AIDAhisto

What are you in to?

Find a meeting

Microscience Microscopy Congress 2021

Core Technologies for Life Sciences 2021

European Light Microscopy Initiative (ELMI) 2021

Light-Sheet Fluorescence Microscopy Virtual Conference

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists