Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

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Our latest submissions

New on Microlist!

Imaging Specialist

For University of Warwick
In 21 Gibbet Hill Rd

Euro-BioImaging Bio-Hub - EU Project Manager

For EMBL Heidelberg
In Heidelberg

Light Microscopy Imaging Specialist

For Faculty of Medicine, University of Ottawa
In Ottawa

Some of our favs

Featured Listings

Microcourses YouTube Channel

Short videos on microscopy fundamentals

Microforum

The light microscopy discussion forum

Image Analysis Forum: image.sc

The image analysis discussion forum

Browse

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Tools for microscopists

Getting things done

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

smfBox

Build a single molecule FRET box
Created by Craggs Lab

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network

Quantitative Phase Microscopy Software interface

GPU DHM
Created by Lee Lab @JCSMR

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

SPIMagine

GPU accelerated volume rendering
Created by Weigert M

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab

NIH Figshare.com

A data repository for all NIH-funded researchers
Created by National Institutes of Health

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School

Browse by Technique

What are you in to?

Fluorescent Proteins

8 listings

Super-Resolution Microscopy

7 listings

58 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

5 listings

Machine Learning

17 listings

Confocal Microscopy

10 listings

7 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

Stereology Workshop

Format: In-person
Location: Bern, Switzerland
Starts on 2022-08-08

Stereology workshop

Format: In-person
Location: Bern, Switzerland
Starts on 2022-08-08

Resources by Location

Where do you want to be?

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