Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Systems Biology Imaging Platform

For Max-Delbruck-Center (MDC) Berlin
In Berlin, Germany

Postdoctoral fellow position in the field of RAS cancer cell biology

For The University of Luxembourg
In Luxembourg

Live-cell imaging: a practical workshop

3 days
in Norfolk, UK
Course starts on 2020-06-16

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

The mesoSPIM Initiative

Open-source light-sheet microscopes for imaging cleared tissue
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

Image and Data Analysis Core Software List

A list of open-source software for image analysis

Browse by Technique

What are you in to?

Fluorescent Proteins

10 listings

Super-Resolution Microscopy

11 listings

Image Analysis

49 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

9 listings

Machine Learning

14 listings

Confocal Microscopy

12 listings

Detectors

7 listings

Fluorescence Microscopy

16 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

36 listings

11 listings

26 listings

3 listings

3 listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Systems Biology Imaging Platform

Postdoctoral fellow position in the field of RAS cancer cell biology

Live-cell imaging: a practical workshop

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

BigStitcher

PatternUnmixer 2.0

Napari

Bio-Formats

Optogenetics Resource Center

European Advanced Light Microscopy Network (EAMNET)

The Microscope Objective Patent Explorer

CellProfiler

OMERO

CIDRE

Advanced Cell Classifier

Multi-view simulation

FPbase

CellOrganizer

Chroma Spectraviewer

The mesoSPIM Initiative

Thermo Fisher Scientific Fluorescence Spectraviewer

ilastik

Ray Optics Simulation

Image and Data Analysis Core Software List

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists