Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

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Our latest submissions

New on Microlist!

Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis
Created by Nils Körber

Optical Engineer

For The Rockefeller University
In 1230 York Ave

Instrument Specialist

For Allen Institute for Cell Science
In Seattle

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Microcourses YouTube Channel

Short videos on microscopy fundamentals

Microforum

The light microscopy discussion forum

Image Analysis Forum: image.sc

The image analysis discussion forum

Browse

Getting things done

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

Managing Core Facilities

Compiled by the Microscopy Alliance
Created by Microscopy Alliance

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

7 listings

Image Analysis

59 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

6 listings

Machine Learning

18 listings

Confocal Microscopy

11 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

German BioImaging Spring School

Format: In-person
Location: Münsingen, germany
Starts on 2022-03-21

Confocal Microscopy Course

Format: In-person
Location: York, UK
Starts on 2022-03-22

Resources by Location

Where do you want to be?

Europe

13 listings

3 listings

22 listings

1 listing

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µlist

A searchable database of resourcesfor light microscopists

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New on Microlist!

Microscopic Image Analyzer (MIA)

Optical Engineer

Instrument Specialist

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Getting things done

PatternUnmixer 2.0

Camera Simulator

Image Tools Resource

CSBDeep

EAMNET Downloads

Nucleaizer.org

The Microscopy and Microanalysis Facility Resource List

ScanImage

Mesmerize: A highly versatile platform for calcium imaging analysis

LLSpy

Managing Core Facilities

Thermo Fisher Scientific Fluorescence Spectraviewer

pyLattice

PYthon Microscopy Environment

Python Bioimage Computing Toolkit

LLSpy-SLM

ilastik

Danuser Lab Software

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

pyCUDAdecon

What are you in to?

Find a meeting

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Nikon Imaging Center at Harvard Medical School Workshops

German BioImaging Spring School

Confocal Microscopy Course

Where do you want to be?

A searchable database of resources
for light microscopists

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