Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

Global Bioimaging shares International Recommendations for Career Paths in Imaging Core Facilities

CareerPath/ ImagingScientists/ CollaborativeEffort / GlobalChallenges

Electron and Light Microscopy Specialist

For Baylor University
In Waco

Scientist I – Whole Brain Electron Microscopy - Imaging

For Allen Institute
In Seattle

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Pixel Chart

Learn how an image histogram is formed
Created by Andrei Kashcha

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

SuRVoS Workbench

Super Region Volume Segmentation
Created by Diamond Light Source & The University of Nottingham.

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School

SpekCheck

For filterset optimisation
Created by Micron Oxford

Mastodon

Tracking and track-editing framework

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

Image and Data Analysis Core Software List

A list of open-source software for image analysis

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

Dragonfly (Non-Commercial Licensing)

Non-commercial license for Dragonfly software
Licensed by Object Research Systems

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

Electron Microscopy

19 listings

Fluorescence Microscopy

14 listings

Confocal Microscopy

9 listings

Super-Resolution Microscopy

6 listings

62 listings

Fluorescent Proteins

8 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

5 listings

Machine Learning

19 listings

Master's Degree Programme in Biomedical Imaging

Location Turku, Finland, 60.45181, 22.26663

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location Boston, MA, USA, 42.36008, -71.05888

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17 listings

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