Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

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Our latest submissions

New on Microlist!

Imaging Specialist

For Columbia University
In Broadway/w 168 St

Research Technician II - Neuroscience

For Washington University School of Medicine
In Saint Louis

Staff Scientist - Neuroscience

For Washington University School of Medicine
In St. Louis

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Microcourses YouTube Channel

Short videos on microscopy fundamentals

Microforum

The light microscopy discussion forum

Image Analysis Forum: image.sc

The image analysis discussion forum

Browse

Getting things done

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School

BioImageXD

Analyzing, processing & visualizing nD images

Resource List from Microscopy Services Laboratory (MSL)

A list of teaching and learning microscopy resources
Created by MSL UNC-Chapel Hill

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

Mastodon

Tracking and track-editing framework

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

Image and Data Analysis Core Software List

A list of open-source software for image analysis

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

7 listings

Image Analysis

58 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

7 listings

Machine Learning

18 listings

Confocal Microscopy

11 listings

Detectors

8 listings

Fluorescence Microscopy

16 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

German BioImaging Spring School

Format: In-person
Location: Münsingen, germany
Starts on 2022-03-21

Confocal Microscopy Course

Format: In-person
Location: York, UK
Starts on 2022-03-22

Resources by Location

Where do you want to be?

Europe

13 listings

4 listings

35 listings

1 listing

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µlist

A searchable database of resourcesfor light microscopists

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New on Microlist!

Imaging Specialist

Research Technician II - Neuroscience

Staff Scientist - Neuroscience

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Getting things done

Advanced Cell Classifier

μManager

The Open Microscopy Environment

PYthon Microscopy Environment

Petr’s Microscopy Resources

pyCUDAdecon

BioImageXD

Resource List from Microscopy Services Laboratory (MSL)

miCube Open Source Microscope

Optical Microscopy Course Educational Kit

Bioimage Informatics Index

EAMNET Downloads

CSBDeep

Mesmerize: A highly versatile platform for calcium imaging analysis

Mastodon

BisQue

iScopeCalc

FIJI

fairSIM

Image and Data Analysis Core Software List

What are you in to?

Find a meeting

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Nikon Imaging Center at Harvard Medical School Workshops

German BioImaging Spring School

Confocal Microscopy Course

Where do you want to be?

A searchable database of resources
for light microscopists

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