Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

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Our latest submissions

New on Microlist!

Lead Scientist Advanced Microscopy; Medicines Discovery Catapult

For Medicines Discovery Catapult
In Alderley Edge

Spatial Analysis for Biological Imaging Workshop

Format: In-person
Location: London
Starts on 2023-03-29

Research Support Associate

For The Rockefeller University
In New York

New to Microlist!

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Browse

Getting things done

SuRVoS Workbench

Super Region Volume Segmentation
Created by Diamond Light Source & The University of Nottingham.

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

BigStitcher

Stitching for large datasets
Created by Preibisch Lab

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Microscopy Image Browser

MATLAB-based software package for advanced image processing
Created by Ilya Belevich, Merja Joensuu, Darshan Kumar, Helena Vihinen and Eija Jokitalo

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden

BioImage Archive

A hub for biological images
Created by EMBI-EBI

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis
Created by Nils Körber

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

Image and Data Analysis Core Software List

A list of open-source software for image analysis

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg

Microscopy Training Resources List

A list of microscopy training resources
Created by BioImaging North America

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet

SPIMagine

GPU accelerated volume rendering
Created by Weigert M

Browse by Technique

What are you in to?

Electron Microscopy

21 listings

Fluorescence Microscopy

14 listings

Confocal Microscopy

9 listings

Super-Resolution Microscopy

6 listings

Image Analysis

62 listings

Fluorescent Proteins

8 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

5 listings

Machine Learning

19 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

Microscopy data analysis: machine learning and the BioImage Archive

Format: In-person
Location: Hixton UK
Starts on 2023-03-22

Deep learning for image analysis

Format: In-person
Location: Heidelberg, Germany
Starts on 2023-06-05

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Format: In-person
Location: Woods Hole, MA
Starts on 2023-05-08

Resources by Location

Where do you want to be?

Europe

8 listings

6 listings

16 listings

2 listings

2 listings

1 listing

µlist

A searchable database of resourcesfor light and electron microscopists

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New on Microlist!

Lead Scientist Advanced Microscopy; Medicines Discovery Catapult

Spatial Analysis for Biological Imaging Workshop

Research Support Associate

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

Software Demo IMOD

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Virtual Pub: Building a Volume EM community

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Getting things done

SuRVoS Workbench

LLSpy

BigStitcher

Icy

Microscopy Image Browser

LifeHack

BioImage Archive

The Open Microscopy Environment

Napari

AIDAhisto

OMERO

The Microscope Objective Patent Explorer

Microscopic Image Analyzer (MIA)

Micro-Manager2 MacroExtensions

Petr’s Microscopy Resources

Image and Data Analysis Core Software List

pyLattice

Microscopy Training Resources List

Python Bioimage Computing Toolkit

SPIMagine

What are you in to?

Find a meeting

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Nikon Imaging Center at Harvard Medical School Workshops

Microscopy data analysis: machine learning and the BioImage Archive

Deep learning for image analysis

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Where do you want to be?

A searchable database of resources
for light and electron microscopists

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