Microlist – Microscopy courses, software, meetings & jobs

µlist

A resource for light microscopists

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Tools for microscopists

Getting things done

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW
Open source

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Browse by Technique

What are you in to?

Fluorescent Proteins

8 listings

Super-Resolution Microscopy

13 listings

28 listings

Light Sheet Microscopy

7 listings

Quantitative Microscopy

8 listings

Machine Learning

7 listings

Confocal Microscopy

7 listings

6 listings

Fluorescence Microscopy

8 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2019

Begins 2019-08-04
in Portland, OR, USA

European Microscopy Congress 2020

Begins 2019-08-23
in Copenhagen, Denmark

European Molecular Imaging Meeting

Begins 2019-03-09
in Glasgow, UK

3rd Biobrillouin Meeting

Begins 2019-09-25
in Porto, Portugal

Microscopy Courses

Nothing beats full immersion

Zurich Image and Data Analysis School

6 days
in Zurich, Switzerland
Applications due on 2019-04-15

Analytical & Quantitative Light Microscopy

10 days
in Woods Hole, MA

Super-Resolution Summer School

5 days
in Edinburg, UK
Applications due on 2019-03-31

Image Analysis with Fiji

Online

Imaging Structure & Function in the Nervous System

20 days
in Cold Spring Harbor, NY, USA
Applications due on 2019-04-01

Advanced Fluorescence Imaging Techniques

6 days
in Heidelberg, Germany

Resources by Location

Where do you want to be?

22 listings

20 listings

56 listings

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