Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Bioimage Analyst at CFIM (Core Facility for Integrated Microscopy)

For University of Copenhagen
In University of Copenhagen

Light Microscopy applications specialist at CFIM (Core Facility for Integrated Microscopy)

For University of Copenhagen
In University of Copenhagen

Coordinator Image Data Services

For Euro-BioImaging, EMBL
In Heidelberg

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

OpenSPIM

A platform to build, adapt and enhance SPIM technology
Open source

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment
Open source

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab
Open source

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

6 listings

Image Analysis

50 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

6 listings

Machine Learning

16 listings

Confocal Microscopy

9 listings

Detectors

7 listings

Fluorescence Microscopy

12 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-11-30
This event will take place online
in Asburn

Microscience Microscopy Congress 2021

Begins 2021-07-05
This event will take place in-person
in Manchester

Core Technologies for Life Sciences 2021

Begins 2021-09-14
This event will take place in-person
in Lisboa

European Light Microscopy Initiative (ELMI) Meeting 2021

Begins 2021-06-22
This event will take place in-person
in Nordwijkerhout

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

11 listings

3 listings

20 listings

No listings

No listings

No listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Bioimage Analyst at CFIM (Core Facility for Integrated Microscopy)

Light Microscopy applications specialist at CFIM (Core Facility for Integrated Microscopy)

Coordinator Image Data Services

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

pyCUDAdecon

OpenSPIM

Nucleaizer.org

FIJI

SpekCheck

SIMcheck

CIDRE

Mesmerize: A highly versatile platform for calcium imaging analysis

Pixel Chart

ScanImage

Image Data Resource

miCube Open Source Microscope

PYthon Microscopy Environment

BisQue

Napari

CSBDeep

EAMNET Downloads

BigStitcher

The Open Microscopy Environment

European Advanced Light Microscopy Network (EAMNET)

What are you in to?

Find a meeting

Image to Knowledge (I2K): ImageJ User and Developer Conference

Microscience Microscopy Congress 2021

Core Technologies for Life Sciences 2021

European Light Microscopy Initiative (ELMI) Meeting 2021

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists