Microlist – Microscopy courses, software, meetings & jobs

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A resource for light microscopists

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Getting things done

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

8 listings

Super-Resolution Microscopy

13 listings

28 listings

Light Sheet Microscopy

7 listings

Quantitative Microscopy

8 listings

Machine Learning

7 listings

Confocal Microscopy

7 listings

6 listings

Fluorescence Microscopy

8 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

European Molecular Imaging Meeting

Begins 2019-03-09
in Glasgow, UK

53rd Annual Meeting of the Israel Society for Microscopy

Begins 2019-05-29
in Tel Aviv, Israel

BioImage Informatics 2019

in Seattle, WA, USA

Tissue Microstructure Imaging

Begins 2019-07-07
in South Hadley, MA, USA

Microscopy Courses

Nothing beats full immersion

Live Cell Imaging, Optical Sectioning and Measurements

3 days
in Prague, Czech Republic
Applications due on 2019-05-15

Super-Resolution Summer School

5 days
in Edinburg, UK
Applications due on 2019-03-31

Zurich Image and Data Analysis School

6 days
in Zurich, Switzerland
Applications due on 2019-04-15

Advanced Fluorescence Imaging Techniques

6 days
in Heidelberg, Germany

iBiology Microscopy Series

Online

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

22 listings

20 listings

54 listings

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