Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

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Our latest submissions

New on Microlist!

Image Analysis Staff Scientist

For Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP)
In Berlin

Internship Cytometry & Microscopy

For Institute of Science and Technology Austria (ISTA)
In Vienna

Technician Microscopy & Cytometry

For Institute of Science and Technology Austria (ISTA)
In Vienna

New to Microlist!

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Browse

Getting things done

CIDRE

A flatfield illumination correction method
Created by Horvath Lab

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura

Pixel Chart

Learn how an image histogram is formed
Created by Andrei Kashcha

Image and Data Analysis Core Software List

A list of open-source software for image analysis

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

Managing Core Facilities

Compiled by the Microscopy Alliance
Created by Microscopy Alliance

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Mastodon

Tracking and track-editing framework

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

Quantitative Phase Microscopy Software interface

GPU DHM
Created by Lee Lab @JCSMR

BioImageXD

Analyzing, processing & visualizing nD images

Browse by Technique

What are you in to?

Electron Microscopy

20 listings

Fluorescence Microscopy

14 listings

Confocal Microscopy

11 listings

Super-Resolution Microscopy

6 listings

Image Analysis

63 listings

Fluorescent Proteins

8 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

5 listings

Machine Learning

19 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

Microscopy data analysis: machine learning and the BioImage Archive

Format: In-person
Location: Hixton UK
Starts on 2023-03-22

Deep learning for image analysis

Format: In-person
Location: Heidelberg, Germany
Starts on 2023-06-05

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Format: In-person
Location: Woods Hole, MA
Starts on 2023-05-08

Resources by Location

Where do you want to be?

Europe

13 listings