Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

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Our latest submissions

New on Microlist!

Postdoc multimodal in vivo imaging and Neuropixels electrophysiology

For University College London & Imperial College London
In London

Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis
Created by Nils Körber

Optical Engineer

For The Rockefeller University
In 1230 York Ave

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Microcourses YouTube Channel

Short videos on microscopy fundamentals

Microforum

The light microscopy discussion forum

Image Analysis Forum: image.sc

The image analysis discussion forum

Browse

Getting things done

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

Royal Microscopy Society Resources and Downloads

Compiled by the Royal Microscopy Society
Created by Royal Microscopy Society

Bioimage Model Zoo

Advanced AI models in one-click

Managing Core Facilities

Compiled by the Microscopy Alliance
Created by Microscopy Alliance

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Mastodon

Tracking and track-editing framework

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

7 listings

Image Analysis

59 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

6 listings

Machine Learning

18 listings

Confocal Microscopy

11 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Format: In-person
Location: Cold Spring Harbor, NY
Starts on 2022-03-29

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

German BioImaging Spring School

Format: In-person
Location: Münsingen, germany
Starts on 2022-03-21

Confocal Microscopy Course

Format: In-person
Location: York, UK
Starts on 2022-03-22

Resources by Location

Where do you want to be?

Europe

13 listings

4 listings

22 listings

1 listing

No listings

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µlist

A searchable database of resourcesfor light microscopists

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New on Microlist!

Postdoc multimodal in vivo imaging and Neuropixels electrophysiology

Microscopic Image Analyzer (MIA)

Optical Engineer

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Software & Other Tools

eLearning

Conferences & Symposia

Getting things done

Multi-view reconstruction

Fluorescent Biosensor Database

Multi-view simulation

OMERO

ilastik

Royal Microscopy Society Resources and Downloads

Bioimage Model Zoo

Managing Core Facilities

CSBDeep

BisQue

Mastodon

Micro-Manager2 MacroExtensions

The Open Microscopy Environment

Bio-Formats

miCube Open Source Microscope

FIJI

LifeHack

VisBio

Danuser Lab Software

Camera Simulator

What are you in to?

Find a meeting

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Nikon Imaging Center at Harvard Medical School Workshops

German BioImaging Spring School

Confocal Microscopy Course

Where do you want to be?

A searchable database of resources
for light microscopists

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