Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Senior Research Technician – In vivo microscopy

For University College London
In London

PAIR-UP Image Processing Workshop registration

2 days
Online Course
Course starts on 2020-11-17

Spanish & Portuguese Advanced Optical Microscopy Meeting 2020

Begins 2020-11-24
This event will take place online

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu
Open source

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

The Microscope Objective Patent Explorer

Compare objective lens properties
Created by Juan David Lizarazo Ferro
Open source

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy
Open source

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

6 listings

Image Analysis

50 listings

Light Sheet Microscopy

16 listings

Quantitative Microscopy

6 listings

Machine Learning

15 listings

Confocal Microscopy

9 listings

Detectors

7 listings

Fluorescence Microscopy

12 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-11-30
This event will take place online
in Asburn

Microscience Microscopy Congress 2021

Begins 2021-07-05
This event will take place in-person
in Manchester

Core Technologies for Life Sciences 2021

Begins 2021-09-14
This event will take place in-person
in Lisboa

European Light Microscopy Initiative (ELMI) Meeting 2021

Begins 2021-06-22
This event will take place in-person
in Nordwijkerhout

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

7 listings

4 listings

20 listings

No listings

No listings

No listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Senior Research Technician – In vivo microscopy

PAIR-UP Image Processing Workshop registration

Spanish & Portuguese Advanced Optical Microscopy Meeting 2020

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

CIDRE

Image Data Resource

Optogenetics Resource Center

SIMcheck

Pixel Chart

Ray Optics Simulation

Bio-Formats

OMERO

FIJI

The Open Microscopy Environment

The Microscope Objective Patent Explorer

ilastik

Optical Microscopy Course Educational Kit

Fluorescent Biosensor Database

Multi-view simulation

CellOrganizer

Napari

BisQue

Nemonic Consortium Resources & Blog

Camera Simulator

What are you in to?

Find a meeting

Image to Knowledge (I2K): ImageJ User and Developer Conference

Microscience Microscopy Congress 2021

Core Technologies for Life Sciences 2021

European Light Microscopy Initiative (ELMI) Meeting 2021

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists