Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Staff Scientist - Super-Resolution Microscopy

For Scripps
In 10550 North Torrey Pines Road La Jolla

Assistant Director of the Imaging Core

For Indiana University
In Indianapolis

Lab Specialist

For Univeristy of Utah
In Salt Lake City

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Microcourses YouTube Channel

Short microscopy tutorials

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

Mastodon

Tracking and track-editing framework
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
Open source

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute
Open source

Python Bioimage Computing Toolkit

Python functions, scripts, and classes
Created by Marcelo Cicconet
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy
Open source

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab
Open source

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc
Open source

Image and Data Analysis Core Software List

A list of open-source software for image analysis
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics
Open source

NIH Figshare.com

A data repository for all NIH-funded researchers
Created by National Institutes of Health
Open source

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies
Open source

Pixel Chart

Learn how an image histogram is formed
Created by Andrei Kashcha
Open source

smfBox

Build a single molecule FRET box
Created by Craggs Lab
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

9 listings

Image Analysis

65 listings

Light Sheet Microscopy

16 listings

Quantitative Microscopy

6 listings

Machine Learning

22 listings

Confocal Microscopy

12 listings

Detectors

8 listings

Fluorescence Microscopy

17 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2022-05-09
This event will take place in-person
in Madison

UK Light Microscopy Facility Meeting 2020

Begins 2022-01-05
This event will take place online
in Birmingham
Abstract deadline is 2021-11-19

Biophysical Society Annual Meeting

Begins 2022-02-19
This event will take place in-person
in San Francisco

European Light Microscopy Initiative (ELMI) 2023

Begins 2023-06-06
This event will take place in-person
in Noordwijkerhout

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

Master of Science in Microscopy and Imaging

in Galway, Ireland

Let's Experiment: A Guide for Scientists Working at the Bench

Deep Learning for Image Analysis

8 days
in Heidelberg, Germany
Online Course
Course starts on 2021-12-03

NIC@HMS Workshops - Boston, MA

1 days
in Boston, MA

Resources by Location

Where do you want to be?

Europe

15 listings

5 listings

27 listings

2 listings

No listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Staff Scientist - Super-Resolution Microscopy

Assistant Director of the Imaging Core

Lab Specialist

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Online Learning

Meetings

Getting things done

Mastodon

Image Tools Resource

Mesmerize: A highly versatile platform for calcium imaging analysis

CellProfiler

Python Bioimage Computing Toolkit

CSBDeep

SpekCheck

Advanced Cell Classifier

Nemonic Consortium Resources & Blog

Nucleaizer.org

fairSIM

CIDRE

Thermo Fisher Scientific Fluorescence Spectraviewer

Image and Data Analysis Core Software List

BisQue

NIH Figshare.com

ScanImage

Pixel Chart

smfBox

μManager

What are you in to?

Find a meeting

Image to Knowledge (I2K): ImageJ User and Developer Conference

UK Light Microscopy Facility Meeting 2020

Biophysical Society Annual Meeting

European Light Microscopy Initiative (ELMI) 2023

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Let's Experiment: A Guide for Scientists Working at the Bench

Deep Learning for Image Analysis

NIC@HMS Workshops - Boston, MA

Where do you want to be?

A searchable database of resources
for light microscopists