Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

smfBox

Build a single molecule FRET box
Created by Craggs Lab
Open source

SPIMagine

GPU accelerated volume rendering
Created by Weigert M
Open source

The mesoSPIM Initiative

Open-source light-sheet microscopes for imaging cleared tissue
Open source

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Addgene Blogposts on Fluorescent Proteins

Lots of posts from leaders in the FP field

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Applications due on 2020-01-04
Course starts on 2020-03-09

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

Browse

Getting things done

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura
Open source

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

Image and Data Analysis Core Software List

A list of open-source software for image analysis

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

UC2 Open-Source Hardware Project

Respository for Open-Science modular microscope system
Created by Nanoimaging at the IPHT Leibniz Institut Jena
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Browse by Technique

What are you in to?

Fluorescent Proteins

10 listings

Super-Resolution Microscopy

9 listings

Image Analysis

47 listings

Light Sheet Microscopy

16 listings

Quantitative Microscopy

9 listings

Machine Learning

15 listings

Confocal Microscopy

11 listings

Detectors

7 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Applications due on 2020-01-04
Course starts on 2020-03-09

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Resources by Location

Where do you want to be?

Europe

20 listings

17 listings

31 listings

3 listings

No listings

No listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

smfBox

SPIMagine

The mesoSPIM Initiative

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

FPbase

Addgene Blogposts on Fluorescent Proteins

Icy

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

Thermo Fisher Scientific Fluorescence Spectraviewer

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

Image Analysis Focused Interest Group

FPbase

LEGOLish

Pixel Chart

μManager

Optogenetics Resource Center

Napari

Danuser Lab Software

CellCognition

FrapCalc

OMERO

Image and Data Analysis Core Software List

Icy

UC2 Open-Source Hardware Project

Image Tools Resource

Chroma Spectraviewer

Optical Microscopy Course Educational Kit

Petr’s Microscopy Resources

Bio-Formats

BisQue

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

iBiology Microscopy Series

Image Analysis with Fiji

Where do you want to be?

A searchable database of resources
for light microscopists