Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Live-cell imaging: a practical workshop

3 days
in Norfolk, UK
Course starts on 2020-06-16

Optical Imaging and Electrophysiological Recording in Neuroscience

13 days
in Paris, France
Course starts on 2020-05-05

10-Day Practical Course on Advanced Optical Microscopy for Cell Biology

10 days
in Plymouth, UK
Course starts on 2021-03-17

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura
Open source

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

AIDAhisto

A tool optimised for quantification of histological staining of mouse brain tissue
Created by Niklas Pallast and Markus Aswendt
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network
Open source

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

Optical Microscopy Course Educational Kit

A kit for a student-built light microscope
Created by Neil Switz & Dan Fletcher

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

10 listings

Super-Resolution Microscopy

11 listings

Image Analysis

49 listings

Light Sheet Microscopy

17 listings

Quantitative Microscopy

9 listings

Machine Learning

14 listings

Confocal Microscopy

12 listings

Detectors

7 listings

Fluorescence Microscopy

16 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

35 listings

12 listings

27 listings

3 listings

3 listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Live-cell imaging: a practical workshop

Optical Imaging and Electrophysiological Recording in Neuroscience

10-Day Practical Course on Advanced Optical Microscopy for Cell Biology

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

FrapCalc

Petr’s Microscopy Resources

Micro-Manager2 MacroExtensions

Chroma Spectraviewer

CIDRE

AIDAhisto

BigStitcher

European Advanced Light Microscopy Network (EAMNET)

easyFRAP

PSFj

Image Analysis Focused Interest Group

Optical Microscopy Course Educational Kit

QuPath

Napari

PYthon Microscopy Environment

Thermo Fisher Scientific Fluorescence Spectraviewer

Optogenetics Resource Center

pyCUDAdecon

CellProfiler

fairSIM

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists