Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Project Coordinator Biological Image Data Management

For University of Konstanz
In Konstanz Germany

Geschäftsführer/in German BioImaging

For Bioimaging Center der Universität Konstanz
In Universität Konstanz

UC2 CourseBOX

Open-source toolbox for Light Microscopy Courses

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

BioImage Archive

A hub for biological images
Created by EMBI-EBI
Open source

The Open Microscopy Environment

Tools to support data management
Created by University of Dundee & Open Microscopy Environment
Open source

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford
Open source

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies
Open source

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD
Open source

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon
Open source

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab
Open source

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc
Open source

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

7 listings

Image Analysis

50 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

6 listings

Machine Learning

15 listings

Confocal Microscopy

9 listings

Detectors

7 listings

Fluorescence Microscopy

12 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-11-30
This event will take place online
in Asburn

Microscience Microscopy Congress 2021

Begins 2021-07-05
This event will take place in-person
in Manchester

Core Technologies for Life Sciences 2021

Begins 2021-09-14
This event will take place in-person
in Lisboa

European Light Microscopy Initiative (ELMI) Meeting 2021

Begins 2021-06-22
This event will take place in-person
in Nordwijkerhout

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Future dates TBA

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Master of Science in Microscopy and Imaging

in Galway, Ireland

Resources by Location

Where do you want to be?

Europe

18 listings

6 listings

16 listings

3 listings

No listings

2 listings

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Project Coordinator Biological Image Data Management

Geschäftsführer/in German BioImaging

UC2 CourseBOX

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

BioImage Archive

The Open Microscopy Environment

FPbase

Optogenetics Resource Center

ScanImage

EAMNET Downloads

SpekCheck

BigStitcher

Danuser Lab Software

FIJI

LLSpy

Fluorescent Biosensor Database

Nucleaizer.org

CellOrganizer

Multi-view reconstruction

Thermo Fisher Scientific Fluorescence Spectraviewer

TIFFFolder

OMERO

Image Tools Resource

CSBDeep

What are you in to?

Find a meeting

Image to Knowledge (I2K): ImageJ User and Developer Conference

Microscience Microscopy Congress 2021

Core Technologies for Life Sciences 2021

European Light Microscopy Initiative (ELMI) Meeting 2021

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

iBiology Microscopy Series

Image Analysis with Fiji

Master of Science in Microscopy and Imaging

Where do you want to be?

A searchable database of resources
for light microscopists