Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Optical Microscopy Specialist for ERC Synergy Project

For Centre for Genomic Regulation
In Barcelona

Image Analysis Specialist – Mesoscopic Imaging Facility

For EMBL Barceloa
In Barcelona

Optical Microscopy Specialist in the Intracellular Self-Organization Group

For Centre for Genomic Regulation
In Barcelona

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Microcourses YouTube Channel

Short microscopy tutorials

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies
Open source

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg
Open source

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS
Open source

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility
Open source

SPIMagine

GPU accelerated volume rendering
Created by Weigert M
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF
Open source

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

9 listings

Image Analysis

64 listings

Light Sheet Microscopy

16 listings

Quantitative Microscopy

6 listings

Machine Learning

22 listings

Confocal Microscopy

10 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

European Light Microscopy Initiative (ELMI) 2023

Begins 2023-06-06
This event will take place in-person
in Noordwijkerhout

Focus on Microscopy 2022

Begins 2022-04-10
This event will take place in-person
in Porto Portugal

Seeing is Believing: Imaging the Molecular Processes of Life

Begins 2021-10-05
This event will take place online
Must register by 2021-09-07
Abstract deadline is 2021-08-03

Microscopy, Histopathology and Analytics

Begins 2022-04-24
This event will take place in-person
in Fort Lauderdale

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

Master of Science in Microscopy and Imaging

in Galway, Ireland

Let's Experiment: A Guide for Scientists Working at the Bench

NIC@HMS Workshops - Boston, MA

1 days
in Boston, MA

List of Online Microscopy Talks

Online Course

Resources by Location

Where do you want to be?

Europe

22 listings

3 listings

23 listings

2 listings

No listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Optical Microscopy Specialist for ERC Synergy Project

Image Analysis Specialist – Mesoscopic Imaging Facility

Optical Microscopy Specialist in the Intracellular Self-Organization Group

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Online Learning

Meetings

Getting things done

ScanImage

pyLattice

LifeHack

Fluorescent Biosensor Database

Nemonic Consortium Resources & Blog

Advanced Cell Classifier

Bioimage Informatics Index

fairSIM

FIJI

The Microscopy and Microanalysis Facility Resource List

SPIMagine

BisQue

μManager

EAMNET Downloads

ilastik

Image Tools Resource

LEGOLish

Multi-view simulation

Napari

CellOrganizer

What are you in to?

Find a meeting

European Light Microscopy Initiative (ELMI) 2023

Focus on Microscopy 2022

Seeing is Believing: Imaging the Molecular Processes of Life

Microscopy, Histopathology and Analytics

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Let's Experiment: A Guide for Scientists Working at the Bench

NIC@HMS Workshops - Boston, MA

List of Online Microscopy Talks

Where do you want to be?

A searchable database of resources
for light microscopists