Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Postdoctoral position, Laurence Marks Lab

For Northwestern University
In Evanston

Research Engineering/Scientist Associate II (Light Microscope Specialist)

For University of Texas at Austin
In Austin

Research Associate- Biological Electron Microscopy Technologist

For Cold Spring Harbor Laboratory
In Cold Spring Harbor

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Microcourses YouTube Channel

Short microscopy tutorials

Microforum

A forum for light microscopy discussion

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

FPbase

The Fluorescent Protein Database
Created by Talley Lambert, Harvard Medical School
Open source

smfBox

Build a single molecule FRET box
Created by Craggs Lab
Open source

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford
Open source

Bioimage Informatics Index

An extensive database of image analysis tools
Created by NEUBIAS
Open source

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber
Open source

NIH Figshare.com

A data repository for all NIH-funded researchers
Created by National Institutes of Health
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer
Open source

Camera Simulator

An online camera simulator
Created by Talley Lambert
Licensed by Hamamatsu Photonics
Open source

Micro-Manager2 MacroExtensions

Allows ImageJ to access Micro-Manager2 functionalities
Created by Jerome Mutterer
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

BioImage Archive

A hub for biological images
Created by EMBI-EBI
Open source

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy
Open source

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

Napari

Fast ND image viewer for python
Created by Sofroniew, Royer, Nunez-Iglesias et al (doi:10.5281/zenodo.3555620)
Open source

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick
Created by Microscopy and Microanalysis Facility
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

9 listings

Super-Resolution Microscopy

8 listings

Image Analysis

63 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

6 listings

Machine Learning

22 listings

Confocal Microscopy

10 listings

Detectors

8 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

European Light Microscopy Initiative (ELMI) 2023

Begins 2023-06-06
This event will take place in-person
in Noordwijkerhout

Focus on Microscopy 2022

Begins 2022-04-10
This event will take place in-person
in Porto Portugal

Seeing is Believing: Imaging the Molecular Processes of Life

Begins 2021-10-05
This event will take place online
Must register by 2021-09-07
Abstract deadline is 2021-08-03

Microscopy, Histopathology and Analytics

Begins 2022-04-24
This event will take place in-person
in Fort Lauderdale

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

Master of Science in Microscopy and Imaging

in Galway, Ireland

Let's Experiment: A Guide for Scientists Working at the Bench

NIC@HMS Workshops - Boston, MA

1 days
in Boston, MA

List of Online Microscopy Talks

Online Course

Resources by Location

Where do you want to be?

Europe

21 listings

3 listings

24 listings

2 listings

No listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Postdoctoral position, Laurence Marks Lab

Research Engineering/Scientist Associate II (Light Microscope Specialist)

Research Associate- Biological Electron Microscopy Technologist

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Microforum

Image Analysis Forum: image.sc

Categories

Courses

Tools

Online Learning

Meetings

Getting things done

FPbase

smfBox

SIMcheck

Bioimage Informatics Index

VisBio

NIH Figshare.com

Multi-view simulation

Image Data Resource

BioImageXD

Petr’s Microscopy Resources

Camera Simulator

Micro-Manager2 MacroExtensions

CellCognition

BioImage Archive

Nemonic Consortium Resources & Blog

Advanced Cell Classifier

BigStitcher

Napari

Image Tools Resource

The Microscopy and Microanalysis Facility Resource List

What are you in to?

Find a meeting

European Light Microscopy Initiative (ELMI) 2023

Focus on Microscopy 2022

Seeing is Believing: Imaging the Molecular Processes of Life

Microscopy, Histopathology and Analytics

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Master's Degree Programme in Biomedical Imaging

Master of Science in Microscopy and Imaging

Let's Experiment: A Guide for Scientists Working at the Bench

NIC@HMS Workshops - Boston, MA

List of Online Microscopy Talks

Where do you want to be?

A searchable database of resources
for light microscopists