Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

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Our latest submissions

New on Microlist!

Bioimage Data Analysis Workflows ‒ Advanced Components and Methods

Desigingn and implementing bioimage analysis workflows

Light-Sheet Fluorescence Microscopy Conference (LSFM)

Format: In-person
Location: Woods Hole, MA
Starts on 2023-05-08

Videotape: From Microscope To Figure

A video tutorial

New to Microlist!

vEM Online Education

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Browse

Getting things done

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

SuRVoS Workbench

Super Region Volume Segmentation
Created by Diamond Light Source & The University of Nottingham.

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL

LifeHack

Open-Source Microscope for Single Molecule Imaging
Created by J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden

UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox

Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL

Advanced Cell Classifier

Machine learning method for image data analysis
Created by Horvath Lab

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab

Mastodon

Tracking and track-editing framework

Mesmerize: A highly versatile platform for calcium imaging analysis

Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Image and Data Analysis Core Software List

A list of open-source software for image analysis

CIDRE

A flatfield illumination correction method
Created by Horvath Lab

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley

Multi-view reconstruction

Software for reconstruction of multiview images
Created by Preibisch Lab

Browse by Technique

What are you in to?

Electron Microscopy

23 listings

Fluorescence Microscopy

13 listings

Confocal Microscopy

8 listings

Super-Resolution Microscopy

5 listings

Image Analysis

60 listings

Fluorescent Proteins

8 listings

Light Sheet Microscopy

15 listings

Quantitative Microscopy

5 listings

Machine Learning

19 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy Courses

Nothing beats full immersion

Master's Degree Programme in Biomedical Imaging

Location: Turku, Finland

Master of Science in Microscopy and Imaging

Location: Galway, Ireland

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location: Boston, MA

Volume electron microscopy by automated serial SEM

Format: In-person
Location: Lausanne Switzerland
Starts on 2022-11-06

Microscopy data analysis: machine learning and the BioImage Archive

Format: In-person
Location: Hixton UK
Starts on 2023-03-22

In situ CLEM at room temperature and in cryo

Format: In-person
Location: Heidelberg, Germany
Starts on 2023-02-12

Resources by Location

Where do you want to be?

Europe

10 listings

3 listings

20 listings

2 listings

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