Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Postdoctoral Fellow – In vivo miniscope imaging in Alzheimer models

For University College London
In London, UK

Postdoc Position on Image Processing and Analysis for Super-Resolution Microscopy

For Istituto Italiano di Tecnologia
In Genova, Metropolitan City of Genoa, Italy

Microscopist – Optical

For Peter MacCallum Cancer Centre
In Melbourne VIC, Australia

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

CSBDeep

A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Open source

Chroma Spectraviewer

A spectraviewer from the company Chroma
Created by Chroma Technology Corporation

Thermo Fisher Scientific Fluorescence Spectraviewer

Fluorescence spectraviewer
Created by Thermo Fisher Scientific Inc

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Image and Data Analysis Core Software List

A list of open-source software for image analysis

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

The mesoSPIM Initiative

Open-source light-sheet microscopes for imaging cleared tissue
Open source

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab
Open source

Open source laser engine

Parts list, CAD files & detailed descriptions
Created by Ries Lab, EMBL
Open source

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

BigStitcher

Stitching for large datasets
Created by Preibisch Lab
Open source

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

SpekCheck

For filterset optimisation
Created by Micron Oxford
Open source

European Advanced Light Microscopy Network (EAMNET)

Teaching modules and software
Created by European Advanced Light Microscopy Network
Open source

Petr’s Microscopy Resources

An extensive list of microscopy resources
Created by Petr Schauer

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison
Open source

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

Optogenetics Resource Center

All things optogenetics
Created by Deisseroth Lab at Stanford

BioImage Archive

A hub for biological images
Created by EMBI-EBI

Browse by Technique

What are you in to?

Fluorescent Proteins

11 listings

Super-Resolution Microscopy

11 listings

Image Analysis

47 listings

Light Sheet Microscopy

18 listings

Quantitative Microscopy

8 listings

Machine Learning

13 listings

Confocal Microscopy

10 listings

Detectors

7 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Course starts on 2020-03-09

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Resources by Location

Where do you want to be?

Europe

27 listings

11 listings

36 listings

2 listings

2 listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Postdoctoral Fellow – In vivo miniscope imaging in Alzheimer models

Postdoc Position on Image Processing and Analysis for Super-Resolution Microscopy

Microscopist – Optical

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

CSBDeep

Chroma Spectraviewer

Thermo Fisher Scientific Fluorescence Spectraviewer

Icy

Image and Data Analysis Core Software List

CellOrganizer

The mesoSPIM Initiative

easyFRAP

Open source laser engine

EAMNET Downloads

BigStitcher

TIFFFolder

SpekCheck

European Advanced Light Microscopy Network (EAMNET)

Petr’s Microscopy Resources

Nemonic Consortium Resources & Blog

FIJI

Ray Optics Simulation

Optogenetics Resource Center

BioImage Archive

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

iBiology Microscopy Series

Image Analysis with Fiji

Where do you want to be?

A searchable database of resources
for light microscopists