Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light microscopists

Our latest submissions

New on Microlist!

Postdoc Position on Image Processing and Analysis for Super-Resolution Microscopy

For Istituto Italiano di Tecnologia
In Genova, Metropolitan City of Genoa, Italy

Microscopist – Optical

For Peter MacCallum Cancer Centre
In Melbourne VIC, Australia

Advanced Microscopy Specialist

For University of Oxford
In Oxford, UK

Some of our favs

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Image Analysis Forum: image.sc

An image analysis discussion forum

Browse

Getting things done

Nucleaizer.org

A cell segmentation tool
Created by Horvath Lab

Image Tools Resource

List of open-source analysis software for bioimaging
Created by Image Data Resource
Open source

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber
Open source

FrapCalc

Analyzes FRAP curves with various models
Created by K Miura
Open source

CellCognition

Automatic analysis of high-content live cell imaging data
Created by Gerlich & Langer
Open source

Multi-view simulation

Code for simulating a multiview acquisition
Created by Preibisch Lab
Open source

Pixel Chart

Created by Andrei Kashcha
Open source

CIDRE

A flatfield illumination correction method
Created by Horvath Lab
Open source

Fluorescent Biosensor Database

Community-editable database of biosensors
Created by Eric Greenwald and the Jin Zhang lab at UCSD

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

BioImage Archive

A hub for biological images
Created by EMBI-EBI

LEGOLish

A lego approach to SPIM/LSFM
Created by Colombelli, Tosi & Andilla
Open source

LLSpy-SLM

Python app for generating SLM masks for lattice light sheet
Created by Talley Lambert, Harvard Medical School
Open source

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment
Open source

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab
Open source

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School
Open source

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

EAMNET Downloads

Links to Macros and software packages
Created by EAMNET
Open source

The mesoSPIM Initiative

Open-source light-sheet microscopes for imaging cleared tissue
Open source

Browse by Technique

What are you in to?

Fluorescent Proteins

11 listings

Super-Resolution Microscopy

11 listings

Image Analysis

47 listings

Light Sheet Microscopy

18 listings

Quantitative Microscopy

8 listings

Machine Learning

13 listings

Confocal Microscopy

10 listings

Detectors

7 listings

Fluorescence Microscopy

15 listings

Find a meeting

Maybe we'll see you there

Explore all meetings

Microscopy & Microanalysis 2020

Begins 2020-08-02
in Milwaukee, WI, USA

European Microscopy Congress 2020

Begins 2020-08-23
in Copenhagen, Denmark
Must register by 2020-07-06
Abstract deadline is 2020-03-01

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

International Society for Bioluminescence and Chemiluminescence Joint Congress

Begins 2020-06-22
in Gijano De Mena, Spain

Microscopy Courses

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31
Course starts on 2020-03-24

Microcourses YouTube Channel

Online Course

Master's Degree Programme in Biomedical Imaging

in Turku, Finland

19th Annual workshop on FLIM and FRET Microscopy

5 days
in Charlottesville, VA
Course starts on 2020-03-09

iBiology Microscopy Series

Online Course

Image Analysis with Fiji

Online Course

Resources by Location

Where do you want to be?

Europe

27 listings

10 listings

36 listings

2 listings

2 listings

1 listing

µlist

A searchable database of resourcesfor light microscopists

New on Microlist!

Postdoc Position on Image Processing and Analysis for Super-Resolution Microscopy

Microscopist – Optical

Advanced Microscopy Specialist

Featured Listings

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Image Analysis Forum: image.sc

Categories

Courses

Tools

Learning Materials

Meetings

Getting things done

Nucleaizer.org

Image Tools Resource

VisBio

FrapCalc

CellCognition

Multi-view simulation

Pixel Chart

CIDRE

Fluorescent Biosensor Database

Ray Optics Simulation

BioImage Archive

LEGOLish

LLSpy-SLM

Bio-Formats

μManager

miCube Open Source Microscope

TIFFFolder

PatternUnmixer 2.0

EAMNET Downloads

The mesoSPIM Initiative

What are you in to?

Find a meeting

Microscopy & Microanalysis 2020

European Microscopy Congress 2020

Image to Knowledge (I2K): ImageJ User and Developer Conference

International Society for Bioluminescence and Chemiluminescence Joint Congress

Nothing beats full immersion

Quantitative Imaging: From Acquisition to Analysis

Microcourses YouTube Channel

Master's Degree Programme in Biomedical Imaging

19th Annual workshop on FLIM and FRET Microscopy

iBiology Microscopy Series

Image Analysis with Fiji

Where do you want to be?

A searchable database of resources
for light microscopists