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Techniques

Image Analysis

From Pictures to Numbers

2 days
in University of Antwerp, Belgium
Applications due on 2019-06-01

BioImage Informatics 2019

in Seattle, WA, USA

QuPath

software for whole slide image analysis
Created by Pete Bankhead and Jose Fernandez
Open source

Zurich Image and Data Analysis School

6 days
in Zurich, Switzerland
Applications due on 2019-04-15

Image to Knowledge (I2K): ImageJ User and Developer Conference

Begins 2020-09-17
in Madison, WI, USA

Bioimage Data Analysis

Software overview and examples of image analysis

Society of Biomolecular Imaging and Informatics

Begins 2019-09-17
in Boston, MA, USA

pyCUDAdecon

Python wrapper for cudaDecon - 3D deconvolution
Created by Talley Lambert, Harvard Medical School
Open source

Danuser Lab Software

Several different software packages available
Created by Danuser Lab, UTSW
Open source

Image Data Resource

Online, public data repository
Created by University of Dundee & Open Microscopy Environment

Bioimage Computing @ CVPR 2019

Begins 2019-06-16
in Long Beach, CA, USA

Analyzing Fluorescence Microscopy Images with ImageJ

An online ImageJ textbook

Image Analysis with Fiji

Online

Pixel Chart

Created by Andrei Kashcha
Open source

PatternUnmixer 2.0

Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

ilastik

Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
Open source

BioImageXD

Analyzing, processing & visualizing nD images
Open source

BisQue

Store, visualize, organize and analyze in the cloud
Created by UCSB Center for Bio-image Informatics

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH
Open source

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

Image and Data Analysis Core Software List

A list of open-source software for image analysis

Analytical & Quantitative Light Microscopy

10 days
in Woods Hole, MA

Marine Biological Laboratory

Advanced Fluorescence Imaging Techniques

6 days
in Heidelberg, Germany

European Molecular Biology Laboratory (EMBL)

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Quantitative Imaging: From Acquisition to Analysis

14 days
in Cold Spring Harbor, NY
Applications due on 2020-01-31

Cold Spring Harbor Laboratory (CSHL)

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