What's it do for me?

Mesmerize, is a comprehensive and versatile calcium imaging analysis platform. Our platform encompasses the entire process of calcium imaging analysis, from raw data to interactive & reproducible publication figures. It also uses cutting edge techniques, such as the Caiman library for signal extraction, and machine learning for downstream analysis. Users can seamlessly map stimuli or behavioral periods on their data. Mesmerize  works with both 2D and 3D (volumetric) datasets.

More information can be found here:

Docs: http://docs.mesmerizelab.org/

biorxiv: https://doi.org/10.1101/840488

GitHub: https://github.com/kushalkolar/MESmerize

Video Tutorials:  https://www.youtube.com/playlist?list=PLgofWiw2s4REPxH8bx8wZo_6ca435OKqg

 

Created by

Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou

Is it open source?

Yes