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Techniques
Machine Learning
Seeing is believing: imaging the molecular processes of life
Format: Hybrid (in-person & remote options)
Starts on 2023-10-04
Location: Heidelberg, Germany, 49.39875, 8.67243
Bioimage Data Analysis Workflows ‒ Advanced Components and Methods
Desigingn and implementing bioimage analysis workflows
Weka
Data mining with open source machine learning software
Created by University of Waikato
Bioimage Model Zoo
Advanced AI models in one-click
Applied Machine Learning
Applied Machine Learning course at Cornell Tech
Center for Open Bioimage Analysis YouTube Channel
CellProfiler tutorials
Python tutorials for image processing
Python tutorials for image processing
Quantitative Phase Microscopy Software interface
GPU DHM
Created by Lee Lab @JCSMR
Deep Learning Based Segmentation For Biologists
An online workshop
Mesmerize: A highly versatile platform for calcium imaging analysis
Platform for Calcium imaging analysis
Created by Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
UC2 [YouSeeToo] - Open-Source Modular Optical Toolbox
Open-Source Modular Optical Toolbox for Microscopy
Created by B. Diederich, R. Lachmann, B. Marsikova, E. Bingöl, S. Carlstedt, X. Uwurukundo, H. Wang, R. Heintzmann, et al.
Licensed by CERN, GPL-v3, CC-BY-NC
Advanced Cell Classifier
Machine learning method for image data analysis
Created by Horvath Lab
Nucleaizer.org
A cell segmentation tool
Created by Horvath Lab
CSBDeep
A toolbox for Content-aware Image Restoration (CARE)
Created by Weigert M et al
Bioimage Analysis Course: Life cycle of an image data set
Graduate student level introduction to bioimage analysis
Image Tools Resource
List of open-source analysis software for bioimaging
Created by Image Data Resource
PyImageSearch
Object-recognition with Python/OpenCV
PatternUnmixer 2.0
Object type recognition for automated analysis
Created by Murphy Lab, Carnegie Mellon
CellOrganizer
Model learning tools
Created by Murphy Lab, Carnegie Mellon
ilastik
Interactive learning and segmentation toolkit
Created by Anna Kreshuk's lab, EMBL
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