Archives: Listings

Ray Optics Simulation

Simulate reflection and refraction of light
Created by Rick Tu

Single-Molecule Localization Microscopy Software Benchmarking

Compare localization software

PYthon Microscopy Environment

Image acquisition & analysis
Created by David Baddeley

PSFj

Software for point spread function analysis
Created by Knop Lab, ZMBH

OMERO

View, organize, analyze and share imaging data
Created by University of Dundee & Open Microscopy Environment

μManager

For control of automated microscopes
Created by Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

CellProfiler

For measuring and analyzing cell images
Created by Carpenter Lab, Broad Institute

iScopeCalc

A simulator for optical and digital resolution
Created by Talley Lambert, Harvard Medical School

Image and Data Analysis Core Software List

A list of open-source software for image analysis